SNP Profiles of UF 613   View Data

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 Key

 1234567891011121314
_Input profile
CGATCCTTCTACCCAGCCATAGAAACCT
1._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
2._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
3._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
4._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
5._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
6._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
7._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
8._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
9._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
10._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
11._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
12._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
13._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
14._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
15._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
16._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
17._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
18._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
19._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
20._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
21._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
22._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
23._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
24._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
25._RUQ_1573
__CCTTCTACCCAGCCAT_AAACCT
26._RUQ_1573
__CC____AG____AC_
27._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
28._RUQ_1573
CGATCCTTCTACCCAGCCATAGAAACCT
29._UF_613
CGATCCTTCTAC_AGCCATAGAAACCT
30._RUQ_1573
__CC_CTACGGAG_AT____
31._UF_613
CGATAAGTTTCCCCAG_AAGGAGACCT
 1516171819202122232425262728
_Input profile
GTCCACCTTTGGCTTTGGATTTAGCTAG
1._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
2._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
3._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
4._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
5._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
6._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
7._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
8._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
9._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
10._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
11._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
12._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
13._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
14._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
15._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
16._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
17._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
18._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
19._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
20._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
21._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
22._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
23._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
24._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
25._RUQ_1573
GTCCACCTTTGGCT____AGCT_
26._RUQ_1573
_CCAC_TTGG_____AG_AG
27._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
28._RUQ_1573
GTCCACCTTTGGCTTTGGATTTAGCTAG
29._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
30._RUQ_1573
_CCAC__CCCT___TT_CT_
31._UF_613
GTCGACTTGGCGCTCTCGATCTAGTTAG
 29303132333435363738    
_Input profile
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
1._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
2._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
3._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
4._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
5._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
6._GC-05-057-2-08
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
7._GC-05-057-2-08
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
8._GC-05-057-2-08
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
9._GC-05-057-2-08
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
10._GC-05-057-2-08
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
11._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
12._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
13._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
14._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
15._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
16._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
17._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
18._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
19._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
20._UF_613
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
21._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
22._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
23._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
24._GC-08-046-1-57
ATCTCTGTCCAACTGGAGCTX_XX_XX_XX_X
25._RUQ_1573
___GT__CTGGAG_X_XX_XX_XX_X
26._RUQ_1573
_CT_GT___GG__X_XX_XX_XX_X
27._UF_613
ATCTCTGTCCACCTGGAGCTX_XX_XX_XX_X
28._RUQ_1573
ATCTCTGTCCACCTGGAGCTX_XX_XX_XX_X
29._UF_613
AT_CTGTCCACCTGGAGTTX_XX_XX_XX_X
30._RUQ_1573
_______CC__X_XX_XX_XX_X
31._UF_613
AACTTTGTCCACCCCGAGCTX_XX_XX_XX_X

Input profile: UF_613

 
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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

1._UF_613

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

2._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._UF_613 GC-05-057-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

7._UF_613 GC-05-057-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._UF_613 GC-05-057-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._UF_613 GC-05-057-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._UF_613 GC-05-057-2-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

12._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

13._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

14._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

15._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

16._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

17._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

18._UF_613

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

19._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

20._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

21._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._UF_613 RUQ_1573

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._UF_613 RUQ_1573

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._UF_613

98.7 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_613 RUQ_1573

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._UF_613

97.2 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

30._UF_613 RUQ_1573

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

70.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1442
36TcSNP1458 37TcSNP1484 38TcSNP1520